pCRM PCE8952

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Region plotRegion plot detailDotplot
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CRM:
PCE8952
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,134,297
pCRM end:
8,135,991
pCRM len:
1,695

D.pse fasta:
dpse unflanked
dpse arm:
3,213,138
dpse start:
999,717
dpse end:
998,169
dpse len:
1,549

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.2

percent iden:
35.2%

D.mel sites:
19
D.pse sites:
12
Aligned sites:
2
Aligned + preserved sites:
11

D.mel site dens:
11.2
D.pse site dens:
7.7
Aligned site dens:
1.2
Aligned + preserved site dens:
6.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+9571
5' gene CG:
CG1387
5' gene:
CG1387
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1387 flybase
5' gene start:
8,124,726
5' gene end:
8,128,450
5' gene txl start:
8,125,134

pCRM position 3' gene relative:
+1216
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15345
3' gene:
CG15345
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15345 flybase
3' gene start:
8,137,207
3' gene end:
8,136,101
3' gene txl start:
8,136,787

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: