pCRM PCE8955

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Region plotRegion plot detailDotplot
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CRM:
PCE8955
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,543,570
pCRM end:
1,544,651
pCRM len:
1,082

D.pse fasta:
dpse unflanked
dpse arm:
3,212,994
dpse start:
107,971
dpse end:
109,736
dpse len:
1,766

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.2

percent iden:
66.4%

D.mel sites:
14
D.pse sites:
10
Aligned sites:
1
Aligned + preserved sites:
10

D.mel site dens:
12.9
D.pse site dens:
5.7
Aligned site dens:
0.9
Aligned + preserved site dens:
9.2

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+19214
5' gene CG:
CG4231
5' gene:
Or22b
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Or22b flybase
5' gene start:
1,524,356
5' gene end:
1,525,925
5' gene txl start:
1,524,368

pCRM position 3' gene relative:
-12,173
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG14351
3' gene:
CG14351
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14351 flybase
3' gene start:
1,556,824
3' gene end:
1,609,283
3' gene txl start:
1,602,299

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: