pCRM PCE8957

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Region plotRegion plot detailDotplot
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CRM:
PCE8957
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
4,581,676
pCRM end:
4,582,520
pCRM len:
845

D.pse fasta:
dpse unflanked
dpse arm:
3,213,101
dpse start:
562,786
dpse end:
563,472
dpse len:
687

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.1

percent iden:
42.2%

D.mel sites:
14
D.pse sites:
4
Aligned sites:
4
Aligned + preserved sites:
4

D.mel site dens:
16.6
D.pse site dens:
5.8
Aligned site dens:
4.7
Aligned + preserved site dens:
4.7

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+21617
5' gene CG:
CG7524
5' gene:
Src64B
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Src64B flybase
5' gene start:
4,604,137
5' gene end:
4,572,454
5' gene txl start:
4,576,359

pCRM position 3' gene relative:
+21617
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7524
3' gene:
Src64B
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Src64B flybase
3' gene start:
4,604,137
3' gene end:
4,572,454
3' gene txl start:
4,576,359

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: