pCRM PCE8967

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8967
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
15,827,785
pCRM end:
15,829,246
pCRM len:
1,462

D.pse fasta:
dpse unflanked
dpse arm:
3,212,573
dpse start:
6,649
dpse end:
7,392
dpse len:
744

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.8

percent iden:
29.3%

D.mel sites:
25
D.pse sites:
7
Aligned sites:
2
Aligned + preserved sites:
7

D.mel site dens:
17.1
D.pse site dens:
9.4
Aligned site dens:
1.4
Aligned + preserved site dens:
4.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+5015
5' gene CG:
CG4451
5' gene:
Hs6st
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Hs6st flybase
5' gene start:
15,834,261
5' gene end:
15,755,452
5' gene txl start:
15,832,159

pCRM position 3' gene relative:
+5015
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG4451
3' gene:
Hs6st
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Hs6st flybase
3' gene start:
15,834,261
3' gene end:
15,755,452
3' gene txl start:
15,832,159

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: