pCRM PCE8972

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8972
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,523,578
pCRM end:
8,525,143
pCRM len:
1,566

D.pse fasta:
dpse unflanked
dpse arm:
3,213,008
dpse start:
451,994
dpse end:
450,186
dpse len:
1,809

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.6

percent iden:
57.3%

D.mel sites:
18
D.pse sites:
9
Aligned sites:
2
Aligned + preserved sites:
8

D.mel site dens:
11.5
D.pse site dens:
5.0
Aligned site dens:
1.3
Aligned + preserved site dens:
5.1

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+19631
5' gene CG:
CG11354
5' gene:
Lim1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Lim1 flybase
5' gene start:
8,544,774
5' gene end:
8,496,233
5' gene txl start:
8,544,005

pCRM position 3' gene relative:
+19631
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG11354
3' gene:
Lim1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Lim1 flybase
3' gene start:
8,544,774
3' gene end:
8,496,233
3' gene txl start:
8,544,005

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: