pCRM PCE8973

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8973
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
11,097,437
pCRM end:
11,098,713
pCRM len:
1,277

D.pse fasta:
dpse unflanked
dpse arm:
3,213,122
dpse start:
316,548
dpse end:
315,400
dpse len:
1,149

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.6

percent iden:
48.2%

D.mel sites:
15
D.pse sites:
7
Aligned sites:
2
Aligned + preserved sites:
7

D.mel site dens:
11.7
D.pse site dens:
6.1
Aligned site dens:
1.6
Aligned + preserved site dens:
5.5

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+1753
5' gene CG:
CG8403
5' gene:
SP2353
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
SP2353 flybase
5' gene start:
11,095,684
5' gene end:
11,109,662
5' gene txl start:
11,102,049

pCRM position 3' gene relative:
+1753
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG8403
3' gene:
SP2353
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
SP2353 flybase
3' gene start:
11,095,684
3' gene end:
11,109,662
3' gene txl start:
11,102,049

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: