pCRM PCE8975

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8975
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
19,716,382
pCRM end:
19,717,478
pCRM len:
1,097

D.pse fasta:
dpse unflanked
dpse arm:
3,212,589
dpse start:
230,956
dpse end:
232,047
dpse len:
1,092

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.5

percent iden:
47.0%

D.mel sites:
14
D.pse sites:
6
Aligned sites:
2
Aligned + preserved sites:
6

D.mel site dens:
12.8
D.pse site dens:
5.5
Aligned site dens:
1.8
Aligned + preserved site dens:
5.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-6,529
5' gene CG:
CG17004
5' gene:
DD2R
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
DD2R flybase
5' gene start:
19,709,853
5' gene end:
19,700,740
5' gene txl start:
19,709,175

pCRM position 3' gene relative:
+7448
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG9569
3' gene:
CG9569
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG9569 flybase
3' gene start:
19,724,926
3' gene end:
19,722,457
3' gene txl start:
19,724,926

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: