pCRM PCE8977
| CRM: |
| PCE8977 |
|---|
| Overlaps: |
| CE8008 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X.3 |
|---|
| pCRM start: |
| 9,457,113 |
|---|
| pCRM end: |
| 9,458,627 |
|---|
| pCRM len: |
| 1,515 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,341 |
|---|
| dpse start: |
| 122,231 |
|---|
| dpse end: |
| 123,639 |
|---|
| dpse len: |
| 1,409 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 0.9 |
|---|
|
| percent iden: |
| 56.1% |
|---|
|
| D.mel sites: |
| 18 |
|---|
| D.pse sites: |
| 6 |
|---|
| Aligned sites: |
| 2 |
|---|
| Aligned + preserved sites: |
| 5 |
|---|
|
| D.mel site dens: |
| 11.9 |
|---|
| D.pse site dens: |
| 4.3 |
|---|
| Aligned site dens: |
| 1.3 |
|---|
| Aligned + preserved site dens: |
| 3.3 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +23942 |
|---|
| 5' gene CG: |
| CG12653 |
|---|
| 5' gene: |
| btd |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| btd flybase |
|---|
| 5' gene start: |
| 9,433,171 |
|---|
| 5' gene end: |
| 9,436,557 |
|---|
| 5' gene txl start: |
| 9,433,657 |
|---|
|
| pCRM position 3' gene relative: |
| -33,315 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG1343 |
|---|
| 3' gene: |
| Sp1 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| Sp1 flybase |
|---|
| 3' gene start: |
| 9,491,942 |
|---|
| 3' gene end: |
| 9,494,253 |
|---|
| 3' gene txl start: |
| 9,491,942 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
