Since founding the lab in 2000, we have been committed to publishing all of our work in open access journals that do not restrict access to publications to subscribers, and thus all of the primary research output of our lab is freely available for you to read and use. We also do not believe that journal titles convey useful information about the quality or value of published works and therefore provide here only a list of authors and the title of each work along with links to the paper.
Haines JE, Eisen MB (2018). Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo.
Journal PubMed PMC Preprint
Quan AS, Eisen MB (2018). The ecology of the Drosophila-yeast mutualism in wineries.
Journal PubMed PMC Preprint
Rahman A, Hallgrímsdóttir I, Eisen MB, Pachter L (2018). Association Mapping From Sequencing Reads Using K-mers
Preprint
Richter D, Fozouini P, Eisen MB, King N (2018). The ancestral animal genetic toolkit revealed by diverse choanoflagellate transcriptomes
Preprint
Elya CN, Lok TC, Spencer QE, McCausland H, Martinez CE et al. (2018). A fungal pathogen that robustly manipulates the behavior of Drosophila melanogaster in the laboratory
Preprint
Stadler MR, Haines JE, Eisen MB (2017). Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early
Journal PubMed PMC
Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP et al. (2017). A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.
Journal PubMed PMC
Stadler MR, Eisen MB (2017). Atlas…t, patterns from every cell.
Journal PubMed
Mir M, Reimer A, Haines JE, Li XY, Stadler M et al. (2017). Dense Bicoid hubs accentuate binding along the morphogen gradient.
Journal PubMed PMC Preprint
Wong Miller KM, Bracewell RR, Eisen MB, Bachtrog D (2017). Patterns of Genome-Wide Diversity and Population Structure in the Drosophila athabasca Species Complex.
Journal PubMed PMC
Combs PA, Eisen MB (2016). Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster.
Journal PubMed PMC Preprint
Elya C, Zhang V, Ludington W, Eisen MB (2016). Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations
Journal PubMed PMC Preprint
Kuntz SG, Eisen MB (2015). Oxygen changes drive non-uniform scaling in Drosophila melanogaster embryogenesis.
Journal PubMed PMC Preprint Data:Figshare
Paris M, Villalta JE, Eisen MB, Lott SE (2015). Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos.
Journal PubMed PMC Data:GEO
Combs PA, Eisen MB (2015). Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols.
Journal PubMed PMC Web Data:GEO
Schiabor KM, Quan AS, Eisen MB (2014). Saccharomyces cerevisiae mitochondria are required for optimal attractiveness to Drosophila melanogaster.
Journal PubMed PMC Preprint
MacManes MD, Eisen MB (2014). Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus.
Journal PubMed PMC Preprint Data:SRA Data:DRYAD
Li XY, Harrison MM, Villalta JE, Kaplan T, Eisen MB (2014). Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition.
Journal PubMed PMC Preprint Data:GEO
Kuntz SG, Eisen MB (2014). Drosophila embryogenesis scales uniformly across temperature in developmentally diverse species.
Journal PubMed PMC Preprint Data:DRYAD
Lott SE, Villalta JE, Zhou Q, Bachtrog D, Eisen MB (2014). Sex-specific embryonic gene expression in species with newly evolved sex chromosomes.
Journal PubMed PMC Data:GEO
Paris M, Kaplan T, Li XY, Villalta JE, Lott SE et al. (2013). Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression.
Journal PubMed PMC Web Data:GEO
Ingram WM, Goodrich LM, Robey EA, Eisen MB (2013). Mice infected with low-virulence strains of Toxoplasma gondii lose their innate aversion to cat urine, even after extensive parasite clearance.
Journal PubMed PMC
Combs PA, Eisen MB (2013). Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression.
Journal PubMed PMC Web Data:GEO
MacManes MD, Eisen MB (2013). Improving transcriptome assembly through error correction of high-throughput sequence reads.
Journal PubMed PMC Data:DRYAD Software:SCRIPTS
Lusk RW, Eisen MB (2013). Spatial promoter recognition signatures may enhance transcription factor specificity in yeast.
Journal PubMed PMC
Teytelman L, Osborne Nishimura EA, Ozaydin B, Eisen MB, Rine J (2012). The enigmatic conservation of a Rap1 binding site in the Saccharomyces cerevisiae HMR-E silencer.
Journal PubMed PMC
Shultzaberger RK, Maerkl SJ, Kirsch JF, Eisen MB (2012). Probing the informational and regulatory plasticity of a transcription factor DNA-binding domain.
Journal PubMed PMC
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ et al. (2011). The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus.
Journal PubMed PMC
Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z et al. (2011). A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.
Journal PubMed PMC
Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB (2011). Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.
Journal PubMed PMC
Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA et al. (2011). Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq.
Journal PubMed PMC Web
Kaplan T, Li XY, Sabo PJ, Thomas S, Stamatoyannopoulos JA et al. (2011). Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.
Journal PubMed PMC
Shultzaberger RK, Malashock DS, Kirsch JF, Eisen MB (2010). The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts.
Journal PubMed PMC
Levin TC, Glazer AM, Pachter L, Brem RB, Eisen MB (2010). Exploring the genetic basis of variation in gene predictions with a synthetic association study.
Journal PubMed PMC
Bradley RK, Li XY, Trapnell C, Davidson S, Pachter L et al. (2010). Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species.
Journal PubMed PMC Web
Lusk RW, Eisen MB (2010). Evolutionary mirages: selection on binding site composition creates the illusion of conserved grammars in Drosophila enhancers.
Journal PubMed PMC
Leung G, Eisen MB (2009). Identifying cis-regulatory sequences by word profile similarity.
Journal PubMed PMC
Rosenblum EB, Poorten TJ, Settles M, Murdoch GK, Robert J et al. (2009). Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus.
Journal PubMed PMC
Teytelman L, Ozaydin B, Zill O, Lefrancois P, Snyder M et al. (2009). Impact of chromatin structures on DNA processing for genomic analyses.
Journal PubMed PMC
MacArthur S, Li XY, Li J, Brown JB, Chu HC et al. (2009). Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.
Journal PubMed PMC
Peterson BK, Hare EE, Iyer VN, Storage S, Conner L et al. (2009). Big genomes facilitate the comparative identification of regulatory elements.
Journal PubMed PMC
Hare EE, Peterson BK, Eisen MB (2008). A careful look at binding site reorganization in the even-skipped enhancers of Drosophila and sepsids.
Journal PubMed PMC
Teytelman L, Eisen MB, Rine J (2008). Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts.
Journal PubMed PMC
Rosenblum EB, Stajich JE, Maddox N, Eisen MB (2008). Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis.
Journal PubMed PMC
Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB (2008). Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.
Journal PubMed PMC
Li XY, MacArthur S, Bourgon R, Nix DA, Pollard DA et al. (2008). Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Journal PubMed PMC
Lusk RW, Eisen MB (2008). Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.
PubMed
Shultzaberger RK, Chiang DY, Moses AM, Eisen MB (2007). Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
Journal PubMed PMC
Pollard DA, Iyer VN, Moses AM, Eisen MB (2006). Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.
Journal PubMed PMC
Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY et al. (2006). Large-scale turnover of functional transcription factor binding sites in Drosophila.
Journal PubMed PMC Software:CisEvolver
Mintseris J, Eisen MB (2006). Design of a combinatorial DNA microarray for protein-DNA interaction studies.
Journal PubMed PMC
Pollard DA, Moses AM, Iyer VN, Eisen MB (2006). Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
Journal PubMed PMC Software:CisEvolver
Chiang DY, Nix DA, Shultzaberger RK, Gasch AP, Eisen MB (2006). Flexible promoter architecture requirements for coactivator recruitment.
Journal PubMed PMC
van Zwet EW, Kechris KJ, Bickel PJ, Eisen MB (2005). Estimating motifs under order restrictions.
Journal PubMed
Keles S, van der Laan MJ, Dudoit S, Xing B, Eisen MB (2003). Supervised detection of regulatory motifs in DNA sequences.
Journal PubMed
Fraser HB, Khaitovich P, Plotkin JB, Paabo S, Eisen MB (2005). Aging and gene expression in the primate brain.
Journal PubMed PMC
Wall DP, Hirsh AE, Fraser HB, Kumm J, Giaever G et al. (2005). Functional genomic analysis of the rates of protein evolution.
Journal PubMed PMC
Nix DA, Eisen MB (2005). GATA: a graphic alignment tool for comparative sequence analysis.
Journal PubMed PMC
Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB (2004). MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
Journal PubMed PMC Web Software:MONKEY
Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M et al. (2004). Conservation and evolution of cis-regulatory systems in ascomycete fungi.
Journal PubMed PMC
Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM et al. (2004). Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
Journal PubMed PMC Web
Kechris KJ, van Zwet E, Bickel PJ, Eisen MB (2004). Detecting DNA regulatory motifs by incorporating positional trends in information content.
Journal PubMed PMC
Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB (2004). Correction: Benchmarking tools for the alignment of functional noncoding DNA.
Journal PubMed PMC
Fraser HB, Hirsh AE, Wall DP, Eisen MB (2004). Coevolution of gene expression among interacting proteins.
Journal PubMed PMC
Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB (2004). Noise minimization in eukaryotic gene expression.
Journal PubMed PMC
Fay JC, McCullough HL, Sniegowski PD, Eisen MB (2004). Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae.
Journal PubMed PMC
Moses AM, Chiang DY, Eisen MB (2004). Phylogenetic motif detection by expectation-maximization on evolutionary mixtures.
PubMed Software:EMnEM
Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB (2004). Benchmarking tools for the alignment of functional noncoding DNA.
Journal PubMed PMC Web
Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB (2003). Position specific variation in the rate of evolution in transcription factor binding sites.
Journal PubMed PMC
Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB (2003). Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Journal PubMed PMC
Gasch AP, Eisen MB (2002). Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.
PubMed PMC Web Software:FuzzyK
Keles S, van der Laan M, Eisen MB (2002). Identification of regulatory elements using a feature selection method.
PubMed
Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE et al. (2002). Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
Journal PubMed PMC Web
Chiang DY, Brown PO, Eisen MB (2001). Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles.
PubMed
Hart JC, Ellis NA, Eisen MB, Miller CT (2018). Convergent evolution of gene expression in two high-toothed stickleback populations.
Preprint
Turelli M, Cooper BS, Richardson KM, Ginsberg PS, Peckenpaugh B et al. (2018). Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila.
Journal PubMed PMC
Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N et al. (2016). The genome of the crustacean
Journal PubMed PMC Preprint
Chen ZX, Sturgill D, Qu J, Jiang H, Park S et al. (2014). Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Journal PubMed PMC
Wong VL, Ellison CE, Eisen MB, Pachter L, Brem RB (2014). Structural variation among wild and industrial strains of Penicillium chrysogenum.
Journal PubMed PMC
Ali-Murthy Z, Lott SE, Eisen MB, Kornberg TB (2013). An essential role for zygotic expression in the pre-cellular Drosophila embryo.
Journal PubMed PMC Web
Rands CM, Darling A, Fujita M, Kong L, Webster MT et al. (2013). Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.
Journal PubMed PMC
Zhou H, Kaplan T, Li Y, Grubisic I, Zhang Z et al. (2013). Dual functions of TAF7L in adipocyte differentiation.
Journal PubMed PMC Web
Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD et al. (2012). DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila.
Journal PubMed PMC
Hu TT, Eisen MB, Thornton KR, Andolfatto P (2012). A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence.
Journal PubMed PMC
Liu Z, Scannell DR, Eisen MB, Tjian R (2011). Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.
Journal PubMed PMC
Li XY, Thomas S, Sabo PJ, Eisen MB, Stamatoyannopoulos JA et al. (2011). The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding.
Journal PubMed PMC
Rubel O, Ahern S, Bethel EW, Biggin MD, Childs H et al. (2013). Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data.
Journal PubMed PMC
Rubel O, Weber GH, Huang MY, Bethel EW, Biggin MD et al. (2010). Integrating data clustering and visualization for the analysis of 3D gene expression data.
Journal PubMed
Jans J, Gladden JM, Ralston EJ, Pickle CS, Michel AH et al. (2009). A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome.
Journal PubMed PMC
Blanchette M, Green RE, MacArthur S, Brooks AN, Brenner SE et al. (2009). Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members.
Journal PubMed PMC
Garnett AT, Han TM, Gilchrist MJ, Smith JC, Eisen MB et al. (2009). Identification of direct T-box target genes in the developing zebrafish mesoderm.
Journal PubMed PMC
Pfeiffer BD, Jenett A, Hammonds AS, Ngo TT, Misra S et al. (2008). Tools for neuroanatomy and neurogenetics in Drosophila.
Journal PubMed PMC
Fowlkes CC, Hendriks CL, Keranen SV, Weber GH, Rubel O et al. (2008). A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
Journal PubMed
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L et al. (2007). Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Journal PubMed PMC
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B et al. (2007). Evolution of genes and genomes on the Drosophila phylogeny.
Journal PubMed Data:FLYBASE Data:WORKING
Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M et al. (2007). Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.
Journal PubMed PMC
Peng H, Long F, Zhou J, Leung G, Eisen MB et al. (2007). Automatic image analysis for gene expression patterns of fly embryos.
Journal PubMed PMC
Luengo Hendriks CL, Keranen SV, Fowlkes CC, Simirenko L, Weber GH et al. (2007). Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.
Journal PubMed PMC
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA et al. (2006). In vivo enhancer analysis of human conserved non-coding sequences.
Journal PubMed
Bee Genome Consortium (2006). Insights into social insects from the genome of the honeybee Apis mellifera.
PubMed PMC
Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S et al. (2006). Primate-specific evolution of an LDLR enhancer.
Journal PubMed PMC
Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR et al. (2006). Rapid quantitative profiling of complex microbial populations.
Journal PubMed PMC
Levy O, Ptacin JL, Pease PJ, Gore J, Eisen MB et al. (2005). Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase.
Journal PubMed PMC
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR et al. (2005). Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
Journal PubMed PMC
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR et al. (2005). Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
Journal PubMed PMC
Harrison MM, Eisen MB (2015). Transcriptional Activation of the Zygotic Genome in Drosophila.
Journal PubMed
Eisen MB, Brown PO (1999). DNA arrays for analysis of gene expression.
PubMed
Bourne PE, Brenner SE, Eisen MB (2015). Ten Years of PLoS Computational Biology: A Decade of Appreciation and Innovation.
Journal PubMed PMC
Bourne PE, Brenner SE, Eisen MB (2005). PLoS Computational Biology: a new community journal.
Journal PubMed PMC
Brown PO, Eisen MB, Varmus HE (2003). Why PLoS became a publisher.
Journal PubMed PMC
Eisen MB, Brown PO, Varmus HE (2002). Public-access group supports PubMed Central.
Journal PubMed
Roberts RJ, Varmus HE, Ashburner M, Brown PO, Eisen MB et al. (2001). Information access. Building a "GenBank" of the published literature.
PubMed
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S et al. (2001). Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications.
Journal PubMed PMC
Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y et al. (2001). Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.
Journal PubMed PMC
Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R et al. (2000). 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns.
Journal PubMed PMC
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB et al. (2000). Genomic expression programs in the response of yeast cells to environmental changes.
PubMed PMC
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS et al. (2000). Molecular portraits of human breast tumours.
Journal PubMed
Lossos IS, Alizadeh AA, Eisen MB, Chan WC, Brown PO et al. (2000). Ongoing immunoglobulin somatic mutation in germinal center B cell-like but not in activated B cell-like diffuse large cell lymphomas.
Journal PubMed PMC
Belenkiy R, Haefele A, Eisen MB, Wohlrab H (2000). The yeast mitochondrial transport proteins: new sequences and consensus residues, lack of direct relation between consensus residues and transmembrane helices, expression patterns of the transport protein genes, and protein-protein interactions with other proteins.
PubMed
Diehn M, Eisen MB, Botstein D, Brown PO (2000). Large-scale identification of secreted and membrane-associated gene products using DNA microarrays.
Journal PubMed
Scherf U, Ross DT, Waltham M, Smith LH, Lee JK et al. (2000). A gene expression database for the molecular pharmacology of cancer.
Journal PubMed
Ross DT, Scherf U, Eisen MB, Perou CM, Rees C et al. (2000). Systematic variation in gene expression patterns in human cancer cell lines.
Journal PubMed
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS et al. (2000). Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.
Journal PubMed
Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC et al. (2001). The Stanford Microarray Database.
PubMed PMC
Johannes G, Carter MS, Eisen MB, Brown PO, Sarnow P (1999). Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray.
PubMed PMC
Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC et al. (2001). The Stanford Microarray Database.
PubMed PMC
Johannes G, Carter MS, Eisen MB, Brown PO, Sarnow P (1999). Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray.
PubMed PMC
Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A et al. (1999). Genome-wide analysis of DNA copy-number changes using cDNA microarrays.
Journal PubMed
Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB et al. (1999). Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.
PubMed PMC
Bassett DE, Eisen MB, Boguski MS (1999). Gene expression informatics--it's all in your mine.
Journal PubMed
Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T et al. (1999). The transcriptional program in the response of human fibroblasts to serum.
PubMed
Eisen MB, Spellman PT, Brown PO, Botstein D (1999). Cluster analysis and display of genome-wide expression patterns.
PubMed PMC
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K et al. (1999). Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
PubMed PMC
Eisen MB, Sabesan S, Skehel JJ, Wiley DC (1997). Binding of the influenza A virus to cell-surface receptors: structures of five hemagglutinin-sialyloligosaccharide complexes determined by X-ray crystallography.
Journal PubMed
Eisen MB, Wiley DC, Karplus M, Hubbard RE (1994). HOOK: a program for finding novel molecular architectures that satisfy the chemical and steric requirements of a macromolecule binding site.
Journal PubMed
Sauter NK, Glick GD, Crowther RL, Park SJ, Eisen MB et al. (1992). Crystallographic detection of a second ligand binding site in influenza virus hemagglutinin.
PubMed PMC